Olivier Bodenreider Vis

*	2009
48	EE	Olivier Bodenreider: Special Issue: Biomedical Ontology in Action. Applied Ontology 4(1): 1-4 (2009)
47	EE	Stefan Schulz, Elena Beisswanger, László van den Hoek, Olivier Bodenreider, Erik M. van Mulligen: Alignment of the UMLS semantic network with BioTop: methodology and assessment. Bioinformatics 25(12): (2009)
46	EE	Lowell Vizenor, Olivier Bodenreider, Alexa T. McCray: Auditing associative relations across two knowledge sources. Journal of Biomedical Informatics 42(3): 426-439 (2009)
45	EE	Fleur Mougin, Olivier Bodenreider, Anita Burgun: Analyzing polysemous concepts from a clinical perspective: Application to auditing concept categorization in the UMLS. Journal of Biomedical Informatics 42(3): 440-451 (2009)
44	EE	Olivier Bodenreider, Lee B. Peters: A graph-based approach to auditing RxNorm. Journal of Biomedical Informatics 42(3): 558-570 (2009)
43	EE	James J. Cimino, Terry F. Hayamizu, Olivier Bodenreider, Brian Davis, Grace A. Stafford, Martin Ringwald: The caBIG terminology review process. Journal of Biomedical Informatics 42(3): 571-580 (2009)
	2008
42	EE	Olivier Bodenreider: Ontologies and Data Integration in Biomedicine: Success Stories and Challenging Issues. DILS 2008: 1-4
41	EE	Fleur Mougin, Anita Burgun, Olivier Bodenreider, Julie Chabalier, Olivier Loréal, Pierre Le Beux: Automatic Methods for Integrating Biomedical Data Sources in a Mediator-Based System. DILS 2008: 61-76
40	EE	Olivier Bodenreider: Comparing SNOMED CT and the NCI Thesaurus through Semantic Web Technologies. KR-MED 2008
39	EE	Jeremy Rogers, Olivier Bodenreider: SNOMED CT: Browsing the Browsers. KR-MED 2008
38	EE	Michael Gruninger, Olivier Bodenreider, Frank Olken, Leo Obrst, Peter Yim: Ontology Summit 2007 - Ontology, taxonomy, folksonomy: Understanding the distinctions. Applied Ontology 3(3): 191-200 (2008)
37	EE	Olivier Bodenreider: Guest-editorial. Applied Ontology 3(4): 201-203 (2008)
36	EE	Satya Sanket Sahoo, Olivier Bodenreider, Joni L. Rutter, Karen J. Skinner, Amit P. Sheth: An ontology-driven semantic mashup of gene and biological pathway information: Application to the domain of nicotine dependence. Journal of Biomedical Informatics 41(5): 752-765 (2008)
	2007
35	EE	Fleur Mougin, Julie Chabalier, Olivier Bodenreider, Anita Burgun: Méthodes de mapping situées aux niveaux instance et schéma pour l'intégration de sources de données hétérogènes. Actes d'IC 2007: 37-49
34	EE	Satya Sanket Sahoo, Kelly Zeng, Olivier Bodenreider, Amit P. Sheth: From "Glycosyltransferase" to "Congenital Muscular Dystrophy": Integrating Knowledge from NCBI Entrez Gene and the Gene Ontology. MedInfo 2007: 1260-1264
33	EE	Kin Wah Fung, Olivier Bodenreider, Alan R. Aronson, William T. Hole, Suresh Srinivasan: Combining Lexical and Semantic Methods of Inter-terminology Mapping Using the UMLS. MedInfo 2007: 605-609
32	EE	Songmao Zhang, Olivier Bodenreider: Lessons Learned from Cross-Validating Alignments between Large Anatomical Ontologies. MedInfo 2007: 822-826
31	EE	Songmao Zhang, Olivier Bodenreider: Hybrid Alignment Strategy for Anatomical Ontologies: Results of the 2007 Ontology Alignment Contest. OM 2007
30	EE	Olivier Bodenreider, Barry Smith, Anand Kumar, Anita Burgun: Investigating subsumption in SNOMED CT: An exploration into large description logic-based biomedical terminologies. Artificial Intelligence in Medicine 39(3): 183-195 (2007)
29	EE	Songmao Zhang, Peter Mork, Olivier Bodenreider, Philip A. Bernstein: Comparing two approaches for aligning representations of anatomy. Artificial Intelligence in Medicine 39(3): 227-236 (2007)
28	EE	Alan Ruttenberg, Tim Clark, William Bug, Matthias Samwald, Olivier Bodenreider, Helen Chen, Donald Doherty, Kerstin Forsberg, Yong Gao, Vipul Kashyap, June Kinoshita, Joanne Luciano, M. Scott Marshall, Chimezie Ogbuji, Jonathan Rees, Susie Stephens, Gwendolyn T. Wong, Elizabeth Wu, Davide Zaccagnini, Tonya Hongsermeier, Eric Neumann, Ivan Herman, Kei-Hoi Cheung: Advancing translational research with the Semantic Web. BMC Bioinformatics 8(S-3): (2007)
27	EE	Songmao Zhang, Olivier Bodenreider: Experience in Aligning Anatomical Ontologies. Int. J. Semantic Web Inf. Syst. 3(2): 1-26 (2007)
	2006
26		Olivier Bodenreider: KR-MED 2006, Formal Biomedical Knowledge Representation, Proceedings of the Second International Workshop on Formal Biomedical Knowledge Representation: "Biomedical Ontology in Action" (KR-MED 2006), Collocated with the 4th International Conference on Formal Ontology in Information Systems (FOIS-2006), Baltimore, Maryland, USA, November 8, 2006 CEUR-WS.org 2006
25	EE	Francisco Azuaje, Haiying Wang, Huiru Zheng, Olivier Bodenreider, Alban Chesneau: Predictive Integration of Gene Ontology-Driven Similarity and Functional Interactions. ICDM Workshops 2006: 114-119
24	EE	Songmao Zhang, Olivier Bodenreider: Aligning Multiple Anatomical Ontologies through a Reference. Ontology Matching 2006
23	EE	Songmao Zhang, Olivier Bodenreider: NLM Anatomical Ontology Alignment System. Results of the 2006 Ontology Alignment Contest. Ontology Matching 2006
22	EE	K. Bretonnel Cohen, Olivier Bodenreider, Lynette Hirschman: Session Introduction. Pacific Symposium on Biocomputing 2006: 1-3
21	EE	Robert Stevens, Olivier Bodenreider, Yves A. Lussier: Session Introduction. Pacific Symposium on Biocomputing 2006: 112-115
20	EE	Songmao Zhang, Olivier Bodenreider, Christine Golbreich: Experience in Reasoning with the Foundational Model of Anatomy in OWL DL. Pacific Symposium on Biocomputing 2006: 200-211
19	EE	Fleur Mougin, Anita Burgun, Olivier Bodenreider: Mapping data elements to terminological resources for integrating biomedical data sources. BMC Bioinformatics 7(S-3): (2006)
18	EE	Olivier Bodenreider, Robert Stevens: Bio-ontologies: current trends and future directions. Briefings in Bioinformatics 7(3): 256-274 (2006)
17	EE	Christine Golbreich, Songmao Zhang, Olivier Bodenreider: The foundational model of anatomy in OWL: Experience and perspectives. J. Web Sem. 4(3): 181-195 (2006)
	2005
16	EE	Haiying Wang, Francisco Azuaje, Olivier Bodenreider: An Ontology-Driven Clustering Method for Supporting Gene Expression Analysis. CBMS 2005: 389-394
15	EE	Olivier Bodenreider, Marc Aubry, Anita Burgun: Non-Lexical Approaches to Identifying Associative Relations in the Gene Ontology. Pacific Symposium on Biocomputing 2005: 104-115
14	EE	M. N. Cantor, Indra Neil Sarkar, Olivier Bodenreider, Yves A. Lussier: GenesTrace: Phenomic Knowledge Discovery via Structured Terminology. Pacific Symposium on Biocomputing 2005: 116-127
13	EE	Olivier Bodenreider, Joyce A. Mitchell, Alexa T. McCray: Session Introduction: Biomedical Ontologies. Pacific Symposium on Biocomputing 2005: 89-92
	2004
12	EE	Francisco Azuaje, Olivier Bodenreider: Incorporating Ontology-Driven Similarity Knowledge into Functional Genomics: An Exploratory Study. BIBE 2004: 317-324
11	EE	Songmao Zhang, Peter Mork, Olivier Bodenreider: Lessons learned from aligning two representations of anatomy. KR-MED 2004: 102-108
10	EE	Olivier Bodenreider, Barry Smith, Anand Kumar, Anita Burgun: Investigating subsumption in DL-based terminologies: A Case Study in SNOMED CT . KR-MED 2004: 12-20
9	EE	Olivier Bodenreider, Joyce A. Mitchell, Alexa T. McCray: Session Introduction. Pacific Symposium on Biocomputing 2004: 164-165
8	EE	Songmao Zhang, Olivier Bodenreider: Investigating Implicit Knowledge in Ontologies with Application to the Anatomical Domain. Pacific Symposium on Biocomputing 2004: 250-261
7		Olivier Bodenreider: The Unified Medical Language System (UMLS): integrating biomedical terminology. Nucleic Acids Research 32(Database-Issue): 267-270 (2004)
	2003
6	EE	Olivier Bodenreider, Joyce A. Mitchell, Alexa T. McCray: Biomedical Ontologies - Session Introduction. Pacific Symposium on Biocomputing 2003: 562-564
5	EE	Mehmet Kayaalp, Alan R. Aronson, Susanne M. Humphrey, Nicholas C. Ide, Lorraine K. Tanabe, Lawrence H. Smith, Dina Demner-Fushman, Russell R. Loane, James G. Mork, Olivier Bodenreider: Methods for Accurate Retrieval of MEDLINE Citations in Functional Genomics. TREC 2003: 441-450
4	EE	Olivier Bodenreider, Alexa T. McCray: Exploring semantic groups through visual approaches. Journal of Biomedical Informatics 36(6): 414-432 (2003)
	2002
3		Olivier Bodenreider, Thomas C. Rindflesch, Anita Burgun: Unsupervised, corpus-based method for extending a biomedical terminology. ACL Workshop on Natural Language Processing in the Biomedical Domain 2002: 53-60
2	EE	Olivier Bodenreider, Anita Burgun, Thomas C. Rindflesch: Assessing the consistency of a biomedical terminology through lexical knowledge. I. J. Medical Informatics 67(1-3): 85-95 (2002)
	2001
1	EE	Anita Burgun, Olivier Bodenreider: Aspects of the taxonomic relation in the biomedical domain. FOIS 2001: 222-233

Coauthor Index

1	Alan R. Aronson	[5] [33]
2	Marc Aubry	[15]
3	Francisco Azuaje	[12] [16] [25]
4	Elena Beisswanger	[47]
5	Philip A. Bernstein	[29]
6	Pierre Le Beux	[41]
7	William Bug	[28]
8	Anita Burgun	[1] [2] [3] [10] [15] [19] [30] [35] [41] [45]
9	M. N. Cantor	[14]
10	Julie Chabalier	[35] [41]
11	Helen Chen	[28]
12	Alban Chesneau	[25]
13	Kei-Hoi Cheung	[28]
14	James J. Cimino	[43]
15	Tim Clark	[28]
16	K. Bretonnel Cohen	[22]
17	Brian Davis	[43]
18	Dina Demner-Fushman	[5]
19	Donald Doherty	[28]
20	Kerstin Forsberg	[28]
21	Kin Wah Fung	[33]
22	Yong Gao	[28]
23	Christine Golbreich	[17] [20]
24	Michael Gruninger	[38]
25	Terry F. Hayamizu	[43]
26	Ivan Herman (Iván Herman)	[28]
27	Lynette Hirschman	[22]
28	László van den Hoek	[47]
29	William T. Hole	[33]
30	Tonya Hongsermeier	[28]
31	Susanne M. Humphrey	[5]
32	Nicholas C. Ide	[5]
33	Vipul Kashyap	[28]
34	Mehmet Kayaalp	[5]
35	June Kinoshita	[28]
36	Anand Kumar	[10] [30]
37	Russell R. Loane	[5]
38	Olivier Loréal	[41]
39	Joanne Luciano	[28]
40	Yves A. Lussier	[14] [21]
41	M. Scott Marshall	[28]
42	Alexa T. McCray	[4] [6] [9] [13] [46]
43	Joyce A. Mitchell	[6] [9] [13]
44	James G. Mork	[5]
45	Peter Mork	[11] [29]
46	Fleur Mougin	[19] [35] [41] [45]
47	Erik M. van Mulligen	[47]
48	Eric Neumann	[28]
49	Leo Obrst	[38]
50	Chimezie Ogbuji	[28]
51	Frank Olken	[38]
52	Lee B. Peters	[44]
53	Jonathan Rees	[28]
54	Thomas C. Rindflesch	[2] [3]
55	Martin Ringwald	[43]
56	Jeremy Rogers	[39]
57	Alan Ruttenberg	[28]
58	Joni L. Rutter	[36]
59	Satya Sanket Sahoo	[34] [36]
60	Matthias Samwald	[28]
61	Indra Neil Sarkar	[14]
62	Stefan Schulz	[47]
63	Amit P. Sheth	[34] [36]
64	Karen J. Skinner	[36]
65	Barry Smith	[10] [30]
66	Lawrence H. Smith	[5]
67	Suresh Srinivasan	[33]
68	Grace A. Stafford	[43]
69	Susie Stephens	[28]
70	Robert Stevens (Robert D. Stevens)	[18] [21]
71	Lorraine K. Tanabe	[5]
72	Lowell Vizenor	[46]
73	Haiying Wang	[16] [25]
74	Gwendolyn T. Wong	[28]
75	Elizabeth Wu	[28]
76	Peter Yim	[38]
77	Davide Zaccagnini	[28]
78	Kelly Zeng	[34]
79	Songmao Zhang	[8] [11] [17] [20] [23] [24] [27] [29] [31] [32]
80	Huiru Zheng	[25]

Colors in the list of coauthors