K. Bretonnel Cohen Vis

*	2009
24	EE	Karin Verspoor, K. Bretonnel Cohen, Lawrence Hunter: The textual characteristics of traditional and Open Access scientific journals are similar. BMC Bioinformatics 10: (2009)
23	EE	Karin Verspoor, Daniel Dvorkin, K. Bretonnel Cohen, Lawrence Hunter: Ontology quality assurance through analysis of term transformations. Bioinformatics 25(12): (2009)
22	EE	Yoshinobu Kano, William A. Baumgartner Jr., Luke McCrohon, Sophia Ananiadou, K. Bretonnel Cohen, Lawrence Hunter, Jun-ichi Tsujii: U-Compare: share and compare text mining tools with UIMA. Bioinformatics 25(15): 1997-1998 (2009)
	2008
21	EE	K. Bretonnel Cohen, Hong Yu, Philip E. Bourne, Lynette Hirschman: Session Introduction. Pacific Symposium on Biocomputing 2008: 551-555
20	EE	J. Gregory Caporaso, Nita Deshpande, J. Lynn Fink, Philip E. Bourne, K. Bretonnel Cohen, Lawrence Hunter: Intrinsic Evaluation of Text Mining Tools May Not Predict Performance on Realistic Tasks. Pacific Symposium on Biocomputing 2008: 640-651
19	EE	Lawrence Hunter, Zhiyong Lu, James Firby, William A. Baumgartner Jr., Helen L. Johnson, Philip V. Ogren, K. Bretonnel Cohen: OpenDMAP: An open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression. BMC Bioinformatics 9: (2008)
18	EE	Dina Demner-Fushman, Sophia Ananiadou, K. Bretonnel Cohen, John Pestian, Jun-ichi Tsujii, Bonnie L. Webber: Themes in biomedical natural language processing: BioNLP08. BMC Bioinformatics 9(S-11): (2008)
	2007
17	EE	K. Bretonnel Cohen: BioNLP. HLT-NAACL (Tutorial Abstracts) 2007: 1-2
16	EE	William A. Baumgartner Jr., K. Bretonnel Cohen, Lynne M. Fox, George Acquaah-Mensah, Lawrence Hunter: Manual curation is not sufficient for annotation of genomic databases. ISMB/ECCB (Supplement of Bioinformatics) 2007: 41-48
15	EE	Pierre Zweigenbaum, Dina Demner-Fushman, Hong Yu, K. Bretonnel Cohen: Session Introduction. Pacific Symposium on Biocomputing 2007: 205-208
14	EE	Helen L. Johnson, K. Bretonnel Cohen, Lawrence Hunter: A Fault Model for Ontology Mapping, Alignment, and Linking Systems. Pacific Symposium on Biocomputing 2007: 233-268
13	EE	Zhiyong Lu, K. Bretonnel Cohen, Lawrence Hunter: Generif Quality Assurance as Summary Revision. Pacific Symposium on Biocomputing 2007: 269-280
12	EE	J. Gregory Caporaso, William A. Baumgartner Jr., David A. Randolph, K. Bretonnel Cohen, Lawrence Hunter: MutationFinder: a high-performance system for extracting point mutation mentions from text. Bioinformatics 23(14): 1862-1865 (2007)
11	EE	J. Gregory Caporaso, William A. Baumgartner Jr., David A. Randolph, K. Bretonnel Cohen, Lawrence Hunter: Rapid Pattern Development for Concept Recognition Systems: Application to Point mutations. J. Bioinformatics and Computational Biology 5(6): 1233-1259 (2007)
	2006
10	EE	K. Bretonnel Cohen, Olivier Bodenreider, Lynette Hirschman: Session Introduction. Pacific Symposium on Biocomputing 2006: 1-3
9	EE	Helen L. Johnson, K. Bretonnel Cohen, William A. Baumgartner Jr., Zhiyong Lu, Michael Bada, Todd Kester, Hyunmin Kim, Lawrence Hunter: Evaluation of Lexical Methods for Detecting Relationships Between Concepts from Multiple Ontologies. Pacific Symposium on Biocomputing 2006: 28-39
8	EE	Zhiyong Lu, K. Bretonnel Cohen, Lawrence Hunter: Finding GeneRIFs via Gene Ontology Annotations. Pacific Symposium on Biocomputing 2006: 52-63
7	EE	J. Gregory Caporaso, William A. Baumgartner Jr., Hyunmin Kim, Zhiyong Lu, Helen L. Johnson, Olga Medvedeva, Anna Lindemann, Lynne M. Fox, Elizabeth K. White, K. Bretonnel Cohen, Lawrence Hunter: Concept Recognition, Information Retrieval, and Machine Learning in Genomics Question-Answering. TREC 2006
6	EE	K. Bretonnel Cohen, Lawrence Hunter: A critical review of PASBio's argument structures for biomedical verbs. BMC Bioinformatics 7(S-3): (2006)
	2005
5	EE	Philip V. Ogren, K. Bretonnel Cohen, Lawrence Hunter: Implications of Compositionality in the Gene Ontology for Its Curation and Usage . Pacific Symposium on Biocomputing 2005
4	EE	J. Gregory Caporaso, William A. Baumgartner Jr., K. Bretonnel Cohen, Helen L. Johnson, Jesse Paquette, Lawrence Hunter: Concept Recognition and the TREC Genomics Tasks. TREC 2005
3	EE	Shuhei Kinoshita, K. Bretonnel Cohen, Philip V. Ogren, Lawrence Hunter: BioCreAtIvE Task1A: entity identification with a stochastic tagger. BMC Bioinformatics 6(S-1): (2005)
	2004
2	EE	Philip V. Ogren, K. Bretonnel Cohen, George Acquaah-Mensah, Jens Eberlein, Lawrence Hunter: The Compositional Structure of Gene Ontology Terms. Pacific Symposium on Biocomputing 2004: 214-225
	2002
1		K. Bretonnel Cohen, Andrew Dolbey, George Acquaah-Mensah, Lawrence Hunter: Contrast and variability in gene names. ACL Workshop on Natural Language Processing in the Biomedical Domain 2002: 14-20

Coauthor Index

1	George Acquaah-Mensah	[1] [2] [16]
2	Sophia Ananiadou	[18] [22]
3	Michael Bada	[9]
4	William A. Baumgartner Jr.	[4] [7] [9] [11] [12] [16] [19] [22]
5	Olivier Bodenreider	[10]
6	Philip E. Bourne	[20] [21]
7	J. Gregory Caporaso	[4] [7] [11] [12] [20]
8	Dina Demner-Fushman	[15] [18]
9	Nita Deshpande	[20]
10	Andrew Dolbey	[1]
11	Daniel Dvorkin	[23]
12	Jens Eberlein	[2]
13	J. Lynn Fink	[20]
14	James Firby	[19]
15	Lynne M. Fox	[7] [16]
16	Lynette Hirschman	[10] [21]
17	Lawrence Hunter	[1] [2] [3] [4] [5] [6] [7] [8] [9] [11] [12] [13] [14] [16] [19] [20] [22] [23] [24]
18	Helen L. Johnson	[4] [7] [9] [14] [19]
19	Yoshinobu Kano	[22]
20	Todd Kester	[9]
21	Hyunmin Kim	[7] [9]
22	Shuhei Kinoshita	[3]
23	Anna Lindemann	[7]
24	Zhiyong Lu	[7] [8] [9] [13] [19]
25	Luke McCrohon	[22]
26	Olga Medvedeva	[7]
27	Philip V. Ogren	[2] [3] [5] [19]
28	Jesse Paquette	[4]
29	John Pestian	[18]
30	David A. Randolph	[11] [12]
31	Jun-ichi Tsujii	[18] [22]
32	Karin Verspoor	[23] [24]
33	Bonnie L. Webber	[18]
34	Elizabeth K. White	[7]
35	Hong Yu	[15] [21]
36	Pierre Zweigenbaum	[15]