Carol Friedman Vis

*	2009
38	EE	Carol Friedman: Discovering Novel Adverse Drug Events Using Natural Language Processing and Mining of the Electronic Health Record. AIME 2009: 1-5
37	EE	Lee T. Sam, Eneida A. Mendonça, Jianrong Li, Judith A. Blake, Carol Friedman, Yves A. Lussier: PhenoGO: an integrated resource for the multiscale mining of clinical and biological data. BMC Bioinformatics 10(S-2): (2009)
	2008
36	EE	Jung-Wei Fan, Carol Friedman: Semantic reclassification of the UMLS concepts. Bioinformatics 24(17): 1971-1973 (2008)
	2007
35	EE	Ying Tao, Lee T. Sam, Jianrong Li, Carol Friedman, Yves A. Lussier: Information theory applied to the sparse gene ontology annotation network to predict novel gene function. ISMB/ECCB (Supplement of Bioinformatics) 2007: 529-538
34	EE	Jung-Wei Fan, Hua Xu, Carol Friedman: Using Distributional Analysis to Semantically Classify UMLS Concepts. MedInfo 2007: 519-523
33	EE	Lee T. Sam, Yang Liu, Jianrong Li, Carol Friedman, Yves A. Lussier: Discovery of Protein Interaction Networks Shared by Diseases. Pacific Symposium on Biocomputing 2007: 76-87
32	EE	Jung-Wei Fan, Hua Xu, Carol Friedman: Using contextual and lexical features to restructure and validate the classification of biomedical concepts. BMC Bioinformatics 8: (2007)
31	EE	Hua Xu, Jung-Wei Fan, George Hripcsak, Eneida A. Mendonça, Marianthi Markatou, Carol Friedman: Gene symbol disambiguation using knowledge-based profiles. Bioinformatics 23(8): 1015-1022 (2007)
30	EE	P. Karina Tulipano, Ying Tao, William S. Millar, Pat Zanzonico, Katherine Kolbert, Hua Xu, Hong Yu, Lifeng Chen, Yves A. Lussier, Carol Friedman: Natural language processing and visualization in the molecular imaging domain. Journal of Biomedical Informatics 40(3): 270-281 (2007)
	2006
29	EE	Ying Tao, Chintan Patel, Carol Friedman, Yves A. Lussier: Issues in Representing Biological and Clinical Phenotypes Using the Formal Models. KR-MED 2006
28	EE	Yves A. Lussier, Tara Borlawsky, Daniel Rappaport, Yang Liu, Carol Friedman: PhenoGO: Assigning Phenotypic Context to Gene Ontology Annotations with Natural Language Processing. Pacific Symposium on Biocomputing 2006: 64-75
27	EE	Carol Friedman, Tara Borlawsky, Lyudmila Shagina, H. Rosie Xing, Yves A. Lussier: Bio-Ontology and text: bridging the modeling gap. Bioinformatics 22(19): 2421-2429 (2006)
26	EE	Michael E. Bales, Rita Kukafka, Ann Burkhardt, Carol Friedman: Qualitative assessment of the International Classification of Functioning, Disability, and Health with respect to the desiderata for controlled medical vocabularies. I. J. Medical Informatics 75(5): 384-395 (2006)
25	EE	Li Zhou, Ying Tao, James J. Cimino, Elizabeth S. Chen, Hongfang Liu, Yves A. Lussier, George Hripcsak, Carol Friedman: Terminology model discovery using natural language processing and visualization techniques. Journal of Biomedical Informatics: 626-636 (2006)
	2005
24	EE	Lifeng Chen, Hongfang Liu, Carol Friedman: Gene name ambiguity of eukaryotic nomenclatures. Bioinformatics 21(2): 248-256 (2005)
23	EE	Ying Tao, Carol Friedman, Yves A. Lussier: Visualizing information across multidimensional post-genomic structured and textual databases. Bioinformatics 21(8): 1659-1667 (2005)
22	EE	Suzanne Bakken, Sookyung Hyun, Carol Friedman, Stephen B. Johnson: ISO reference terminology models for nursing: Applicability for natural language processing of nursing narratives. I. J. Medical Informatics 74(7-8): 615-622 (2005)
21	EE	Eneida A. Mendonça, Janet Haas, Lyudmila Shagina, Elaine Larson, Carol Friedman: Extracting information on pneumonia in infants using natural language processing of radiology reports. Journal of Biomedical Informatics 38(4): 314-321 (2005)
	2004
20	EE	Olivia Tuason, Lifeng Chen, Hongfang Liu, Judith A. Blake, Carol Friedman: Biological Nomenclatures: A Source of Lexical Knowledge and Ambiguity. Pacific Symposium on Biocomputing 2004: 238-249
19	EE	Ivan Iossifov, Michael Krauthammer, Carol Friedman, Vasileios Hatzivassiloglou, Joel S. Bader, Kevin P. White, Andrey Rzhetsky: Probabilistic inference of molecular networks from noisy data sources. Bioinformatics 20(8): 1205-1213 (2004)
18	EE	Sophia Ananiadou, Carol Friedman, Jun-ichi Tsujii: Introduction: named entity recognition in biomedicine. Journal of Biomedical Informatics 37(6): 393-395 (2004)
	2003
17	EE	Lynette Hirschman, Carol Friedman, Robin McEntire, Cathy H. Wu: Linking Biomedical Language, Information and Knowledge - Session Introduction. Pacific Symposium on Biocomputing 2003: 388-390
16	EE	Hongfang Liu, Carol Friedman: Mining Terminological Knowledge in Large Biomedical Corpora. Pacific Symposium on Biocomputing 2003: 415-426
15	EE	Carol Friedman, Hongfang Liu, Lyudmila Shagina: A vocabulary development and visualization tool based on natural language processing and the mining of textual patient reports. Journal of Biomedical Informatics 36(3): 189-201 (2003)
	2002
14		Michael Krauthammer, Pauline Kra, Ivan Iossifov, Shawn M. Gomez, George Hripcsak, Vasileios Hatzivassiloglou, Carol Friedman, Andrey Rzhetsky: Of truth and pathways: chasing bits of information through myriads of articles. ISMB 2002: 249-257
13	EE	Carol Friedman: Editorial. Journal of Biomedical Informatics 35(4): 213-214 (2002)
12	EE	Carol Friedman, Pauline Kra, Andrey Rzhetsky: Two biomedical sublanguages: a description based on the theories of Zellig Harris. Journal of Biomedical Informatics 35(4): 222-235 (2002)
	2001
11		Andrey Rzhetsky, Michael Krauthammer, Tomohiro Koike, Pauline Kra, Shawn M. Gomez, Hong Yu, Pablo Ariel Duboué, Wubin Weng, Steven B. Johnson, Vasileios Hatzivassiloglou, Carol Friedman: GeneWays: A System for Mining Text and for Integrating Data on Molecular Pathways. German Conference on Bioinformatics 2001: 2-5
10		Carol Friedman, Pauline Kra, Hong Yu, Michael Krauthammer, Andrey Rzhetsky: GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles. ISMB (Supplement of Bioinformatics) 2001: 74-82
9	EE	Kathleen McKeown, Shih-Fu Chang, James J. Cimino, Steven Feiner, Carol Friedman, Luis Gravano, Vasileios Hatzivassiloglou, Steven Johnson, Desmond A. Jordan, Judith Klavans, André Kushniruk, Vimla L. Patel, Simone Teufel: PERSIVAL, a system for personalized search and summarization over multimedia healthcare information. JCDL 2001: 331-340
8	EE	Hongfang Liu, Yves A. Lussier, Carol Friedman: Disambiguating Ambiguous Biomedical Terms in Biomedical Narrative Text: An Unsupervised Method. Journal of Biomedical Informatics 34(4): 249-261 (2001)
	2000
7		Andrey Rzhetsky, Tomohiro Koike, Sergey Kalachikov, Shawn M. Gomez, Michael Krauthammer, Sabina H. Kaplan, Pauline Kra, James J. Russo, Carol Friedman: A knowledge model for analysis and simulation of regulatory networks. Bioinformatics 16(12): 1120-1128 (2000)
	1989
6		Carol Friedman: A General Computational Treatment of the Comparative. ACL 1989: 161-168
	1985
5		Emile C. Chi, Carol Friedman, Naomi Sager, Margaret S. Lyman: Processing Free-Text Input to Obtain a Database of Medical Information. SIGIR 1985: 82-90
4	EE	Elaine Marsh, Carol Friedman: Transporting the Linguistic String Project System from a Medical to a Navy Domain. ACM Trans. Inf. Syst. 3(2): 121-140 (1985)
3	EE	Naomi Sager, Emile C. Chi, Carol Friedman, Margaret S. Lyman: Modeling Natural Language Data for Automatic Creation of a Database from Free-Text Input. IEEE Database Eng. Bull. 8(3): 45-55 (1985)
	1983
2	EE	Ralph Grishman, Lynette Hirschman, Carol Friedman: Isolating Domain Dependencies In Natural Language Interfaces. ANLP 1983: 46-53
	1982
1	EE	Ralph Grishman, Lynette Hirschman, Carol Friedman: Natural Language Interfaces Using Limited Semantic Information. COLING 1982: 89-94

Coauthor Index

1	Sophia Ananiadou	[18]
2	Joel S. Bader	[19]
3	Suzanne Bakken	[22]
4	Michael E. Bales	[26]
5	Judith A. Blake	[20] [37]
6	Tara Borlawsky	[27] [28]
7	Ann Burkhardt	[26]
8	Shih-Fu Chang	[9]
9	Elizabeth S. Chen	[25]
10	Lifeng Chen	[20] [24] [30]
11	Emile C. Chi	[3] [5]
12	James J. Cimino	[9] [25]
13	Pablo Ariel Duboué	[11]
14	Jung-Wei Fan	[31] [32] [34] [36]
15	Steven Feiner	[9]
16	Shawn M. Gomez	[7] [11] [14]
17	Luis Gravano	[9]
18	Ralph Grishman	[1] [2]
19	Janet Haas	[21]
20	Vasileios Hatzivassiloglou	[9] [11] [14] [19]
21	Lynette Hirschman	[1] [2] [17]
22	George Hripcsak	[14] [25] [31]
23	Sookyung Hyun	[22]
24	Ivan Iossifov	[14] [19]
25	Stephen B. Johnson	[22]
26	Steven Johnson	[9]
27	Steven B. Johnson	[11]
28	Desmond A. Jordan	[9]
29	Sergey Kalachikov	[7]
30	Sabina H. Kaplan	[7]
31	Judith L. Klavans (Judith Klavans)	[9]
32	Tomohiro Koike	[7] [11]
33	Katherine Kolbert	[30]
34	Pauline Kra	[7] [10] [11] [12] [14]
35	Michael Krauthammer	[7] [10] [11] [14] [19]
36	Rita Kukafka	[26]
37	André Kushniruk	[9]
38	Elaine Larson	[21]
39	Jianrong Li	[33] [35] [37]
40	Hongfang Liu	[8] [15] [16] [20] [24] [25]
41	Yang Liu	[28] [33]
42	Yves A. Lussier	[8] [23] [25] [27] [28] [29] [30] [33] [35] [37]
43	Margaret S. Lyman	[3] [5]
44	Marianthi Markatou	[31]
45	Elaine Marsh	[4]
46	Robin McEntire	[17]
47	Kathleen McKeown	[9]
48	Eneida A. Mendonça	[21] [31] [37]
49	William S. Millar	[30]
50	Chintan Patel	[29]
51	Vimla L. Patel	[9]
52	Daniel Rappaport	[28]
53	James J. Russo	[7]
54	Andrey Rzhetsky	[7] [10] [11] [12] [14] [19]
55	Naomi Sager	[3] [5]
56	Lee T. Sam	[33] [35] [37]
57	Lyudmila Shagina	[15] [21] [27]
58	Ying Tao	[23] [25] [29] [30] [35]
59	Simone Teufel	[9]
60	Jun-ichi Tsujii	[18]
61	Olivia Tuason	[20]
62	P. Karina Tulipano	[30]
63	Wubin Weng	[11]
64	Kevin P. White	[19]
65	Cathy H. Wu	[17]
66	H. Rosie Xing	[27]
67	Hua Xu	[30] [31] [32] [34]
68	Hong Yu	[10] [11] [30]
69	Pat Zanzonico	[30]
70	Li Zhou	[25]