Pedro Mendes

2006
18	EE	Adán Cassan, Helena Figueira, André Martins, Afonso Mendes, Pedro Mendes, Cláudia Pinto, Daniel Vidal: Priberam's Question Answering System in a Cross-Language Environment. CLEF 2006: 300-309
17	EE	Sven Sahle, Ralph Gauges, Jürgen Pahle, Natalia Simus, Ursula Kummer, Stefan Hoops, Christine Lee, Mudita Singhal, Liang Xu, Pedro Mendes: Simulation of biochemical networks using COPASI: a complex pathway simulator. Winter Simulation Conference 2006: 1698-1706
16	EE	Herbert M. Sauro, David Harel, Marta Z. Kwiatkowska, Clifford A. Shaffer, Adelinde M. Uhrmacher, Michael Hucka, Pedro Mendes, Lena Strömbäck, John J. Tyson: Challenges for modeling and simulation methods in systems biology. Winter Simulation Conference 2006: 1720-1730
15	EE	Stefan Hoops, Sven Sahle, Ralph Gauges, Christine Lee, Jürgen Pahle, Natalia Simus, Mudita Singhal, Liang Xu, Pedro Mendes, Ursula Kummer: COPASI - a COmplex PAthway SImulator. Bioinformatics 22(24): 3067-3074 (2006)
14	EE	Pedro Mendes: Metabolomics and the challenges ahead. Briefings in Bioinformatics 7(2): 127 (2006)
2005
13	EE	Carlos Amaral, Helena Figueira, André Martins, Afonso Mendes, Pedro Mendes, Cláudia Pinto: Priberam's Question Answering System for Portuguese. CLEF 2005: 410-419
2004
12	EE	Alberto de la Fuente, Nan Bing, Ina Hoeschele, Pedro Mendes: Discovery of meaningful associations in genomic data using partial correlation coefficients. Bioinformatics 20(18): 3565-3574 (2004)
2003
11		Pedro Mendes, Wei Sha, Keying Ye: Artificial gene networks for objective comparison of analysis algorithms. ECCB 2003: 122-129
10		Pedro Mendes, Pedro Araújo: Using the I. S. as a (Dis)Organization Gauge. ICEIS (2) 2003: 171-176
9		Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano, Adam P. Arkin, Benjamin J. Bornstein, D. Bray, A. Cornish-Bowden, A. A. Cuellar, Serge Dronov, Ernst Dieter Gilles, Martin Ginkel, Victoria Gor, Igor Goryanin, W. J. Hedley, T. Charles Hodgman, J. H. Hofmeyr, P. J. Hunter, Nick S. Juty, J. L. Kasberger, Andreas Kremling, Ursula Kummer, Nicolas Le Novère, Leslie M. Loew, D. Lucio, Pedro Mendes, E. Minch, Eric Mjolsness, Yoichi Nakayama, M. R. Nelson, P. F. Nielsen, T. Sakurada, James C. Schaff, Bruce E. Shapiro, Thomas Simon Shimizu, Hugh D. Spence, Jörg Stelling, Koichi Takahashi, Masaru Tomita, J. Wagner, J. Wang: The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics 19(4): 524-531 (2003)
2002
8	EE	Dianjing Guo, Xingjing Li, Aejaaz Kamal, Olga Brazhnik, Pedro Mendes: A Reference Database for Medicago Truncatula Genes, Protiens, and Metabolites. CSB 2002: 343
7		Pedro Mendes: Emerging bioinformatics for the metabolome. Briefings in Bioinformatics 3(2): 134-145 (2002)
2001
6		Adam C. Siepel, Andrew D. Farmer, Andrew N. Tolopko, Mingzhe Zhuang, Pedro Mendes, William D. Beavis, Bruno W. S. Sobral: ISYS: a decentralized, component-based approach to the integration of heterogeneous bioinformatics resources. Bioinformatics 17(1): 83-94 (2001)
5		Pedro Mendes, Douglas B. Kell: MEG (Model Extender for Gepasi): a program for the modelling of complex, heterogeneous, cellular systems. Bioinformatics 17(3): 288-289 (2001)
1999
4		Pedro Mendes, João Menano: Traffic Simulation of Large Regions. ICEIS 1999: 761
1998
3		Pedro Mendes, Douglas B. Kell: Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation. Bioinformatics 14(10): 869-883 (1998)
1993
2		Pedro Mendes: GEPASI: a software package for modelling the dynamics, steady states and control of biochemical and other systems. Computer Applications in the Biosciences 9(5): 563-571 (1993)
1988
1	EE	Harold Kurstedt, Kwang Lee, Pedro Mendes, Steven Berube: The Responsive System: A New Challenge for AI. IEA/AIE (Vol. 1) 1988: 177-184

Coauthor Index

1	Carlos Amaral	[13]
2	Pedro Araújo	[10]
3	Adam P. Arkin	[9]
4	William D. Beavis	[6]
5	Steven Berube	[1]
6	Nan Bing	[12]
7	H. Bolouri	[9]
8	Benjamin J. Bornstein	[9]
9	D. Bray	[9]
10	Olga Brazhnik	[8]
11	Adán Cassan	[18]
12	A. Cornish-Bowden	[9]
13	A. A. Cuellar	[9]
14	John Doyle (John C. Doyle)	[9]
15	Serge Dronov	[9]
16	Andrew D. Farmer	[6]
17	Helena Figueira	[13] [18]
18	Andrew Finney	[9]
19	Alberto de la Fuente	[12]
20	Ralph Gauges	[15] [17]
21	Ernst Dieter Gilles	[9]
22	Martin Ginkel	[9]
23	Victoria Gor	[9]
24	Igor Goryanin	[9]
25	Dianjing Guo	[8]
26	David Harel	[16]
27	W. J. Hedley	[9]
28	T. Charles Hodgman	[9]
29	Ina Hoeschele	[12]
30	J. H. Hofmeyr	[9]
31	Stefan Hoops	[15] [17]
32	Michael Hucka	[9] [16]
33	P. J. Hunter	[9]
34	Nick S. Juty	[9]
35	Aejaaz Kamal	[8]
36	J. L. Kasberger	[9]
37	Douglas B. Kell	[3] [5]
38	Hiroaki Kitano	[9]
39	Andreas Kremling	[9]
40	Ursula Kummer	[9] [15] [17]
41	Harold Kurstedt	[1]
42	Marta Z. Kwiatkowska	[16]
43	Christine Lee	[15] [17]
44	Kwang Lee	[1]
45	Xingjing Li	[8]
46	Leslie M. Loew	[9]
47	D. Lucio	[9]
48	André Martins	[13] [18]
49	João Menano	[4]
50	Afonso Mendes	[13] [18]
51	E. Minch	[9]
52	Eric Mjolsness	[9]
53	Yoichi Nakayama	[9]
54	M. R. Nelson	[9]
55	P. F. Nielsen	[9]
56	Nicolas Le Novère	[9]
57	Jürgen Pahle	[15] [17]
58	Cláudia Pinto	[13] [18]
59	Sven Sahle	[15] [17]
60	T. Sakurada	[9]
61	Herbert M. Sauro	[9] [16]
62	James C. Schaff	[9]
63	Wei Sha	[11]
64	Clifford A. Shaffer	[16]
65	Bruce E. Shapiro	[9]
66	Thomas Simon Shimizu	[9]
67	Adam C. Siepel	[6]
68	Natalia Simus	[15] [17]
69	Mudita Singhal	[15] [17]
70	Bruno W. S. Sobral	[6]
71	Hugh D. Spence	[9]
72	Jörg Stelling	[9]
73	Lena Strömbäck	[16]
74	Koichi Takahashi	[9]
75	Andrew N. Tolopko	[6]
76	Masaru Tomita	[9]
77	John J. Tyson	[16]
78	Adelinde M. Uhrmacher (Adelinde Uhrmacher)	[16]
79	Daniel Vidal	[18]
80	J. Wagner	[9]
81	J. Wang	[9]
82	Liang Xu	[15] [17]
83	Keying Ye	[11]
84	Mingzhe Zhuang	[6]

Colors in the list of coauthors