| * | 2009 |
| 20 | EE | Daniel L. Rubin,
Ion-Florin Talos,
Michael Halle,
Mark A. Musen,
Ron Kikinis:
Computational neuroanatomy: ontology-based representation of neural components and connectivity.
BMC Bioinformatics 10(S-2): (2009) |
| 19 | EE | Daniel L. Rubin,
Pattanasak Mongkolwat,
Vladimir Kleper,
Kaustubh Supekar,
David S. Channin:
Annotation and Image Markup: Accessing and Interoperating with the Semantic Content in Medical Imaging.
IEEE Intelligent Systems 24(1): 57-65 (2009) |
| 18 | EE | Natalya Fridman Noy,
Nigam H. Shah,
Patricia L. Whetzel,
Benjamin Dai,
Michael Dorf,
Nicholas Griffith,
Clement Jonquet,
Daniel L. Rubin,
Margaret-Anne D. Storey,
Christopher G. Chute,
Mark A. Musen:
BioPortal: ontologies and integrated data resources at the click of a mouse.
Nucleic Acids Research 37(Web-Server-Issue): 170-173 (2009) |
| 2008 |
| 17 | EE | Natalya Fridman Noy,
Nigam Shah,
Benjamin Dai,
Michael Dorf,
Nicholas Griffith,
Clement Jonquet,
Michael Montegut,
Daniel L. Rubin,
Cherie Youn,
Mark A. Musen:
BioPortal: A Web Repository for Biomedical Ontologies and Data Resources.
International Semantic Web Conference (Posters & Demos) 2008 |
| 16 | EE | Graham L. Poulter,
Daniel L. Rubin,
Russ B. Altman,
Cathal Seoighe:
MScanner: a classifier for retrieving Medline citations.
BMC Bioinformatics 9: (2008) |
| 15 | EE | Daniel L. Rubin,
Nigam Shah,
Natalya Fridman Noy:
Biomedical ontologies: a functional perspective.
Briefings in Bioinformatics 9(1): 75-90 (2008) |
| 14 | EE | Daniel L. Rubin:
Creating and Curating a Terminology for Radiology: Ontology Modeling and Analysis.
J. Digital Imaging 21(4): 355-362 (2008) |
| 13 | EE | Natalya Fridman Noy,
Daniel L. Rubin:
Translating the Foundational Model of Anatomy into OWL.
J. Web Sem. 6(2): 133-136 (2008) |
| 12 | EE | Ion-Florin Talos,
Daniel L. Rubin,
Michael Halle,
Mark A. Musen,
Ron Kikinis:
A prototype symbolic model of canonical functional neuroanatomy of the motor system.
Journal of Biomedical Informatics 41(2): 251-263 (2008) |
| 2007 |
| 11 | EE | Woei-Jyh Lee,
Louiqa Raschid,
Padmini Srinivasan,
Nigam Shah,
Daniel L. Rubin,
Natasha Fridman Noy:
Using Annotations from Controlled Vocabularies to Find Meaningful Associations.
DILS 2007: 247-263 |
| 10 | EE | Kaustubh Supekar,
Daniel L. Rubin,
Natasha F. Noy,
Mark A. Musen:
Knowledge Zone: A Public Repository of Peer-Reviewed Biomedical Ontologies.
MedInfo 2007: 812-816 |
| 9 | EE | Nigam H. Shah,
Daniel L. Rubin,
Inigo Espinosa,
Kelli Montgomery,
Mark A. Musen:
Annotation and query of tissue microarray data using the NCI Thesaurus.
BMC Bioinformatics 8: (2007) |
| 2006 |
| 8 | EE | Daniel L. Rubin,
Olivier Dameron,
Yasser Bashir,
David Grossman,
Parvati Dev,
Mark A. Musen:
Using ontologies linked with geometric models to reason about penetrating injuries.
Artificial Intelligence in Medicine 37(3): 167-176 (2006) |
| 7 | EE | Charles E. Kahn,
David S. Channin,
Daniel L. Rubin:
An Ontology for PACS Integration.
J. Digital Imaging 19(4): 316-327 (2006) |
| 2004 |
| 6 | | Elizabeth S. Burnside,
Daniel L. Rubin,
Ross D. Shachter:
Improving a Bayesian network's ability to predict the probability of malignancy of microcalcifications on mammography.
CARS 2004: 1021-1026 |
| 5 | EE | Natalya Fridman Noy,
Daniel L. Rubin,
Mark A. Musen:
Making Biomedical Ontologies and Ontology Repositories Work.
IEEE Intelligent Systems 19(6): 78-81 (2004) |
| 2002 |
| 4 | | Daniel L. Rubin,
Farhad Shafa,
Diane E. Oliver,
Micheal Hewett,
Russ B. Altman:
Representing genetic sequence data for pharmacogenomics: an evolutionary approach using ontological and relational models.
ISMB 2002: 207-215 |
| 3 | EE | Diane E. Oliver,
Daniel L. Rubin,
Joshua M. Stuart,
Micheal Hewett,
Teri E. Klein,
Russ B. Altman:
Ontology Development for a Pharmacogenetics Knowledge Base.
Pacific Symposium on Biocomputing 2002: 65-76 |
| 2 | EE | Daniel L. Rubin,
Micheal Hewett,
Diane E. Oliver,
Teri E. Klein,
Russ B. Altman:
Automating Data Acquisition into Ontologies from Pharmacogenetics Relational Data Sources Using Declarative Object Definitions and XML.
Pacific Symposium on Biocomputing 2002: 88-99 |
| 1 | | Micheal Hewett,
Diane E. Oliver,
Daniel L. Rubin,
Katrina L. Easton,
Joshua M. Stuart,
Russ B. Altman,
Teri E. Klein:
PharmGKB: the Pharmacogenetics Knowledge Base.
Nucleic Acids Research 30(1): 163-165 (2002) |