Nigam H. Shah Vis

Nigam Shah, N. H. Shah

*	2009
20	EE	Nigam H. Shah, Clement Jonquet, Annie P. Chiang, Atul J. Butte, Rong Chen, Mark A. Musen: Ontology-driven indexing of public datasets for translational bioinformatics. BMC Bioinformatics 10(S-2): (2009)
19	EE	Natalya Fridman Noy, Nigam H. Shah, Patricia L. Whetzel, Benjamin Dai, Michael Dorf, Nicholas Griffith, Clement Jonquet, Daniel L. Rubin, Margaret-Anne D. Storey, Christopher G. Chute, Mark A. Musen: BioPortal: ontologies and integrated data resources at the click of a mouse. Nucleic Acids Research 37(Web-Server-Issue): 170-173 (2009)
	2008
18	EE	Clement Jonquet, Mark A. Musen, Nigam Shah: A System for Ontology-Based Annotation of Biomedical Data. DILS 2008: 144-152
17	EE	Natalya Fridman Noy, Nigam Shah, Benjamin Dai, Michael Dorf, Nicholas Griffith, Clement Jonquet, Michael Montegut, Daniel L. Rubin, Cherie Youn, Mark A. Musen: BioPortal: A Web Repository for Biomedical Ontologies and Data Resources. International Semantic Web Conference (Posters & Demos) 2008
16	EE	Nikesh Kotecha, Kyle Bruck, William Lu, Nigam Shah: Pathway knowledge base: An integrated pathway resource using BioPAX. Applied Ontology 3(4): 235-245 (2008)
15	EE	Daniel L. Rubin, Nigam Shah, Natalya Fridman Noy: Biomedical ontologies: a functional perspective. Briefings in Bioinformatics 9(1): 75-90 (2008)
14	EE	Robert J. Marinelli, Kelli Montgomery, Chih Long Liu, Nigam H. Shah, Wijan Prapong, Michael Nitzberg, Zachariah K. Zachariah, Gavin Sherlock, Yasodha Natkunam, Robert B. West, Matt van de Rijn, Patrick O. Brown, Catherine A. Ball: The Stanford Tissue Microarray Database. Nucleic Acids Research 36(Database-Issue): 871-877 (2008)
	2007
13	EE	Woei-Jyh Lee, Louiqa Raschid, Padmini Srinivasan, Nigam Shah, Daniel L. Rubin, Natasha Fridman Noy: Using Annotations from Controlled Vocabularies to Find Meaningful Associations. DILS 2007: 247-263
12	EE	Harith Alani, Natasha Fridman Noy, Nigam Shah, Nigel Shadbolt, Mark A. Musen: Searching ontologies based on content: experiments in the biomedical domain. K-CAP 2007: 55-62
11	EE	Nigam H. Shah, Daniel L. Rubin, Inigo Espinosa, Kelli Montgomery, Mark A. Musen: Annotation and query of tissue microarray data using the NCI Thesaurus. BMC Bioinformatics 8: (2007)
10	EE	Balaji S. Srinivasan, Nigam H. Shah, Jason Flannick, Eduardo Abeliuk, Antal F. Novak, Serafim Batzoglou: Current progress in network research: toward reference networks for key model organisms. Briefings in Bioinformatics 8(5): 318-332 (2007)
	2006
9	EE	Stephen A. Racunas, Nigam Shah, Nina V. Fedoroff: A case study in pathway knowledgebase verification. BMC Bioinformatics 7: 196 (2006)
8	EE	N. H. Shah: Inventory model for deteriorating items and time value of money for a finite time horizon under the permissible delay in payments. Int. J. Systems Science 37(1): 9-15 (2006)
	2004
7	EE	Stephen A. Racunas, Christopher Griffin, Nigam Shah: A Finite Model Theory for Biological Hypotheses. CSB 2004: 616-620
6	EE	Stephen A. Racunas, N. H. Shah, I. Albert, Nina V. Fedoroff: HyBrow: a prototype system for computer-aided hypothesis evaluation. ISMB/ECCB (Supplement of Bioinformatics) 2004: 257-264
5	EE	N. H. Shah, Nina V. Fedoroff: CLENCH: a program for calculating Cluster ENriCHment using the Gene Ontology. Bioinformatics 20(7): 1196-1197 (2004)
	2003
4	EE	Steve Racunas, Nigam Shah, Nina V. Fedoroff: A Contradiction-Based Framework for Testing Gene Regulation Hypotheses. CSB 2003: 634-638
3	EE	Nigam Shah, Jorge Lepre, Yuhai Tu, Gustavo Stolovitzky: Can We Identify Cellular Pathways Implicated in Cancer Using Gene Expression Data? CSB 2003: 94-103
2		N. H. Shah, D. C. King, P. N. Shah, Nina V. Fedoroff: A tool-kit for cDNA microarray and promoter analysis. Bioinformatics 19(14): 1846-1848 (2003)
	2002
1	EE	Muhammad Younas, N. H. Shah, Kuo-Ming Chao: A Multi-agent Approach to SACReD Transactions for E-commerce Applications. EC-Web 2002: 119-128

Coauthor Index

1	Eduardo Abeliuk	[10]
2	Harith Alani	[12]
3	I. Albert	[6]
4	Catherine A. Ball	[14]
5	Serafim Batzoglou	[10]
6	Patrick O. Brown	[14]
7	Kyle Bruck	[16]
8	Atul J. Butte	[20]
9	Kuo-Ming Chao	[1]
10	Rong Chen	[20]
11	Annie P. Chiang	[20]
12	Christopher G. Chute	[19]
13	Benjamin Dai	[17] [19]
14	Michael Dorf	[17] [19]
15	Inigo Espinosa	[11]
16	Nina V. Fedoroff	[2] [4] [5] [6] [9]
17	Jason Flannick	[10]
18	Christopher Griffin	[7]
19	Nicholas Griffith	[17] [19]
20	Clement Jonquet	[17] [18] [19] [20]
21	D. C. King	[2]
22	Nikesh Kotecha	[16]
23	Adam Woei-Jyh Lee (Woei-Jyh Lee)	[13]
24	Jorge Lepre	[3]
25	Chih Long Liu	[14]
26	William Lu	[16]
27	Robert J. Marinelli	[14]
28	Michael Montegut	[17]
29	Kelli Montgomery	[11] [14]
30	Mark A. Musen	[11] [12] [17] [18] [19] [20]
31	Yasodha Natkunam	[14]
32	Michael Nitzberg	[14]
33	Antal F. Novak	[10]
34	Natalya Fridman Noy (Natasha Fridman Noy, Natasha F. Noy)	[12] [13] [15] [17] [19]
35	Wijan Prapong	[14]
36	Stephen A. Racunas	[6] [7] [9]
37	Steve Racunas	[4]
38	Louiqa Raschid	[13]
39	Matt van de Rijn	[14]
40	Daniel L. Rubin	[11] [13] [15] [17] [19]
41	Nigel Shadbolt (Nigel R. Shadbolt)	[12]
42	P. N. Shah	[2]
43	Gavin Sherlock	[14]
44	Balaji S. Srinivasan	[10]
45	Padmini Srinivasan	[13]
46	Gustavo Stolovitzky	[3]
47	Margaret-Anne D. Storey	[19]
48	Yuhai Tu	[3]
49	Robert B. West	[14]
50	Patricia L. Whetzel	[19]
51	Cherie Youn	[17]
52	Muhammad Younas	[1]
53	Zachariah K. Zachariah	[14]

Colors in the list of coauthors