David S. Wishart Vis

*	2009
37	EE	David S. Wishart, Craig Knox, Anchi Guo, Roman Eisner, Nelson Young, Bijaya Gautam, David D. Hau, Nick Psychogios, Edison Dong, Souhaila Bouatra, Rupasri Mandal, Igor Sinelnikov, Jianguo Xia, Leslie Jia, Joseph A. Cruz, Emilia Lim, Constance A. Sobsey, Savita Shrivastava, Paul Huang, Philip Liu, Lydia Fang, Jun Peng, Ryan Fradette, Dean Cheng, Dan Tzur, Melisa Clements, Avalyn Lewis, Andrea De Souza, Azaret Zuniga, Margot Dawe, Yeping Xiong, Derrick Clive, Russell Greiner, Alsu Nazyrova, Rustem Shaykhutdinov, Liang Li, Hans J. Vogel, Ian J. Forsythe: HMDB: a knowledgebase for the human metabolome. Nucleic Acids Research 37(Database-Issue): 603-610 (2009)
36	EE	Jianguo Xia, Nick Psychogios, Nelson Young, David S. Wishart: MetaboAnalyst: a web server for metabolomic data analysis and interpretation. Nucleic Acids Research 37(Web-Server-Issue): 652-660 (2009)
35	EE	Mark V. Berjanskii, Peter Tang, Jack Liang, Joseph A. Cruz, Jianjun Zhou, You Zhou, Edward Bassett, Cam Macdonell, Paul Lu, Guohui Lin, David S. Wishart: GeNMR: a web server for rapid NMR-based protein structure determination. Nucleic Acids Research 37(Web-Server-Issue): 670-677 (2009)
	2008
34	EE	Jianguo Xia, Trent C. Bjorndahl, Peter Tang, David S. Wishart: MetaboMiner - semi-automated identification of metabolites from 2D NMR spectra of complex biofluids. BMC Bioinformatics 9: (2008)
33	EE	Yi Shi, Jianjun Zhou, David Arndt, David S. Wishart, Guohui Lin: Protein contact order prediction from primary sequences. BMC Bioinformatics 9: (2008)
32	EE	David S. Wishart, David Arndt, Mark V. Berjanskii, Anchi Guo, Yi Shi, Savita Shrivastava, Jianjun Zhou, You Zhou, Guohui Lin: PPT-DB: the protein property prediction and testing database. Nucleic Acids Research 36(Database-Issue): 222-229 (2008)
31	EE	David S. Wishart, Craig Knox, Anchi Guo, Dean Cheng, Savita Shrivastava, Dan Tzur, Bijaya Gautam, Murtaza Hassanali: DrugBank: a knowledgebase for drugs, drug actions and drug targets. Nucleic Acids Research 36(Database-Issue): 901-906 (2008)
30	EE	Scott Montgomerie, Joseph A. Cruz, Savita Shrivastava, David Arndt, Mark V. Berjanskii, David S. Wishart: PROTEUS2: a web server for comprehensive protein structure prediction and structure-based annotation. Nucleic Acids Research 36(Web-Server-Issue): 202-209 (2008)
29	EE	Dean Cheng, Craig Knox, Nelson Young, Paul Stothard, Sambasivarao Damaraju, David S. Wishart: PolySearch: a web-based text mining system for extracting relationships between human diseases, genes, mutations, drugs and metabolites. Nucleic Acids Research 36(Web-Server-Issue): 399-405 (2008)
28	EE	David S. Wishart, David Arndt, Mark V. Berjanskii, Peter Tang, Jianjun Zhou, Guohui Lin: CS23D: a web server for rapid protein structure generation using NMR chemical shifts and sequence data. Nucleic Acids Research 36(Web-Server-Issue): 496-502 (2008)
	2007
27	EE	David S. Wishart, Russell Greiner: Session Introduction. Pacific Symposium on Biocomputing 2007: 112-114
26	EE	Craig Knox, Savita Shrivastava, Paul Stothard, Roman Eisner, David S. Wishart: Biospider: A Web Server for Automating Metabolome Annotations. Pacific Symposium on Biocomputing 2007: 145-156
25	EE	David S. Wishart: Current Progress in computational metabolomics. Briefings in Bioinformatics 8(5): 279-293 (2007)
24	EE	David S. Wishart, Dan Tzur, Craig Knox, Roman Eisner, Anchi Guo, Nelson Young, Dean Cheng, Kevin Jewell, David Arndt, Summit Sawhney, Chris Fung, Lisa Nikolai, Mike Lewis, Marie-Aude Coutouly, Ian J. Forsythe, Peter Tang, Savita Shrivastava, Kevin Jeroncic, Paul Stothard, Godwin Amegbey, David Block, David D. Hau, James Wagner, Jessica Miniaci, Melisa Clements, Mulu Gebremedhin, Natalie Guo, Ying Zhang, Gavin E. Duggan, Glen D. MacInnis, Alim M. Weljie, Reza Dowlatabadi, Fiona Bamforth, Derrick Clive, Russell Greiner, Liang Li, Tom Marrie, Brian D. Sykes, Hans J. Vogel, Lori Querengesser: HMDB: the Human Metabolome Database. Nucleic Acids Research 35(Database-Issue): 521-526 (2007)
23	EE	Mark V. Berjanskii, David S. Wishart: The RCI server: rapid and accurate calculation of protein flexibility using chemical shifts. Nucleic Acids Research 35(Web-Server-Issue): 531-537 (2007)
	2006
22		Brett Poulin, Roman Eisner, Duane Szafron, Paul Lu, Russell Greiner, David S. Wishart, Alona Fyshe, Brandon Pearcy, Cam Macdonell, John Anvik: Visual Explanation of Evidence with Additive Classifiers. AAAI 2006
21	EE	David S. Wishart, Craig Knox, Anchi Guo, Savita Shrivastava, Murtaza Hassanali, Paul Stothard, Zhan Chang, Jennifer Woolsey: DrugBank: a comprehensive resource for in silico drug discovery and exploration. Nucleic Acids Research 34(Database-Issue): 668-672 (2006)
20	EE	Mark V. Berjanskii, Stephen Neal, David S. Wishart: PREDITOR: a web server for predicting protein torsion angle restraints. Nucleic Acids Research 34(Web-Server-Issue): 63-69 (2006)
	2005
19		Brett Poulin, Duane Szafron, Paul Lu, Russell Greiner, David S. Wishart, Roman Eisner, Alona Fyshe, Brandon Pearcy, Luca Pireddu: The Proteome Analyst Suite of Automated Function Prediction Tools. AAAI 2005: 1698-1699
18		Luca Pireddu, Brett Poulin, Duane Szafron, Paul Lu, David S. Wishart: Pathway Analyst--Automated Metabolic Pathway Prediction. CIBCB 2005: 243-250
17	EE	Paul Stothard, David S. Wishart: Circular genome visualization and exploration using CGView. Bioinformatics 21(4): 537-539 (2005)
16	EE	Paul Lu, Duane Szafron, Russell Greiner, David S. Wishart, Alona Fyshe, Brandon Pearcy, Brett Poulin, Roman Eisner, Danny Ngo, Nicholas Lamb: PA-GOSUB: a searchable database of model organism protein sequences with their predicted Gene Ontology molecular function and subcellular localization. Nucleic Acids Research 33(Database-Issue): 147-153 (2005)
15	EE	Paul Stothard, Gary H. Van Domselaar, Savita Shrivastava, Anchi Guo, Brian O'Neill, Joseph A. Cruz, Michael Ellison, David S. Wishart: BacMap: an interactive picture atlas of annotated bacterial genomes. Nucleic Acids Research 33(Database-Issue): 317-320 (2005)
14	EE	Rajarshi Maiti, Gary H. Van Domselaar, David S. Wishart: MovieMaker: a web server for rapid rendering of protein motions and interactions. Nucleic Acids Research 33(Web-Server-Issue): 358-362 (2005)
13	EE	Gary H. Van Domselaar, Paul Stothard, Savita Shrivastava, Joseph A. Cruz, Anchi Guo, Xiaoli Dong, Paul Lu, Duane Szafron, Russell Greiner, David S. Wishart: BASys: a web server for automated bacterial genome annotation. Nucleic Acids Research 33(Web-Server-Issue): 455-459 (2005)
	2004
12	EE	Zhiyong Lu, Duane Szafron, Russell Greiner, Paul Lu, David S. Wishart, Brett Poulin, John Anvik, Cam Macdonell, Roman Eisner: Predicting subcellular localization of proteins using machine-learned classifiers. Bioinformatics 20(4): (2004)
11	EE	Nelson Young, Zhan Chang, David S. Wishart: GelScape: a web-based server for interactively annotating, manipulating, comparing and archiving 1D and 2D gel images. Bioinformatics 20(6): 976-978 (2004)
10	EE	David S. Wishart, Robert Yang, David Arndt, Peter Tang, Joseph A. Cruz: Dynamic cellular automata: a simple but powerful approach to cellular simulation. In Silico Biology 5: (2004)
9		Shan Sundararaj, Anchi Guo, Bahram Habibi-Nazhad, Melania Rouani, Paul Stothard, Michael Ellison, David S. Wishart: The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli. Nucleic Acids Research 32(Database-Issue): 293-295 (2004)
8		Duane Szafron, Paul Lu, Russell Greiner, David S. Wishart, Brett Poulin, Roman Eisner, Zhiyong Lu, John Anvik, Cam Macdonell, Alona Fyshe, David Meeuwis: Proteome Analyst: custom predictions with explanations in a web-based tool for high-throughput proteome annotations. Nucleic Acids Research 32(Web-Server-Issue): 365-371 (2004)
7		Rajarshi Maiti, Gary H. Van Domselaar, Haiyan Zhang, David S. Wishart: SuperPose: a simple server for sophisticated structural superposition. Nucleic Acids Research 32(Web-Server-Issue): 590-594 (2004)
6		Xiaoli Dong, Paul Stothard, Ian J. Forsythe, David S. Wishart: PlasMapper: a web server for drawing and auto-annotating plasmid maps. Nucleic Acids Research 32(Web-Server-Issue): 660-664 (2004)
	2003
5		Leigh Willard, Anuj Ranjan, Haiyan Zhang, Hassan Monzavi, Robert F. Boyko, Brian D. Sykes, David S. Wishart: VADAR: a web server for quantitative evaluation of protein structure quality. Nucleic Acids Research 31(13): 3316-3319 (2003)
	2000
4		Peter M. Hooper, Haiyan Zhang, David S. Wishart: Prediction of genetic structure in eukaryotic DNA using reference point logistic regression and sequence alignment. Bioinformatics 16(5): 425-438 (2000)
	1997
3		David S. Wishart, S. Fortin, David R. Woloschuk, W. Wong, T. Rosborough, Gary H. Van Domselaar, Jonathan Schaeffer, Duane Szafron: A platform-independent graphical user interface for SEQSEE and XALIGN. Computer Applications in the Biosciences 13(5): 561-562 (1997)
	1994
2		David S. Wishart, Robert F. Boyko, Leigh Willard, Frederic M. Richards, Brian D. Sykes: SEQSEE: a comprehensive program suite for protein sequence analysis. Computer Applications in the Biosciences 10(2): 121-132 (1994)
1		David S. Wishart, Robert F. Boyko, Brian D. Sykes: Constrained multiple sequence alignment using XALIGN. Computer Applications in the Biosciences 10(6): 687-688 (1994)

Coauthor Index

1	Godwin Amegbey	[24]
2	John Anvik	[8] [12] [22]
3	David Arndt	[10] [24] [28] [30] [32] [33]
4	Fiona Bamforth	[24]
5	Edward Bassett	[35]
6	Mark V. Berjanskii	[20] [23] [28] [30] [32] [35]
7	Trent C. Bjorndahl	[34]
8	David Block	[24]
9	Souhaila Bouatra	[37]
10	Robert F. Boyko	[1] [2] [5]
11	Zhan Chang	[11] [21]
12	Dean Cheng	[24] [29] [31] [37]
13	Melisa Clements	[24] [37]
14	Derrick Clive	[24] [37]
15	Marie-Aude Coutouly	[24]
16	Joseph A. Cruz	[10] [13] [15] [30] [35] [37]
17	Sambasivarao Damaraju	[29]
18	Margot Dawe	[37]
19	Gary H. Van Domselaar	[3] [7] [13] [14] [15]
20	Edison Dong	[37]
21	Xiaoli Dong	[6] [13]
22	Reza Dowlatabadi	[24]
23	Gavin E. Duggan	[24]
24	Roman Eisner	[8] [12] [16] [19] [22] [24] [26] [37]
25	Michael Ellison	[9] [15]
26	Lydia Fang	[37]
27	Ian J. Forsythe	[6] [24] [37]
28	S. Fortin	[3]
29	Ryan Fradette	[37]
30	Chris Fung	[24]
31	Alona Fyshe	[8] [16] [19] [22]
32	Bijaya Gautam	[31] [37]
33	Mulu Gebremedhin	[24]
34	Russell Greiner	[8] [12] [13] [16] [19] [22] [24] [27] [37]
35	Anchi Guo	[9] [13] [15] [21] [24] [31] [32] [37]
36	Natalie Guo	[24]
37	Bahram Habibi-Nazhad	[9]
38	Murtaza Hassanali	[21] [31]
39	David D. Hau	[24] [37]
40	Peter M. Hooper	[4]
41	Paul Huang	[37]
42	Kevin Jeroncic	[24]
43	Kevin Jewell	[24]
44	Leslie Jia	[37]
45	Craig Knox	[21] [24] [26] [29] [31] [37]
46	Nicholas Lamb	[16]
47	Avalyn Lewis	[37]
48	Mike Lewis	[24]
49	Liang Li	[24] [37]
50	Jack Liang	[35]
51	Emilia Lim	[37]
52	Guohui Lin (Guo-Hui Lin)	[28] [32] [33] [35]
53	Philip Liu	[37]
54	Paul Lu	[8] [12] [13] [16] [18] [19] [22] [35]
55	Zhiyong Lu	[8] [12]
56	Glen D. MacInnis	[24]
57	Cam Macdonell	[8] [12] [22] [35]
58	Rajarshi Maiti	[7] [14]
59	Rupasri Mandal	[37]
60	Tom Marrie	[24]
61	David Meeuwis	[8]
62	Jessica Miniaci	[24]
63	Scott Montgomerie	[30]
64	Hassan Monzavi	[5]
65	Alsu Nazyrova	[37]
66	Stephen Neal	[20]
67	Danny Ngo	[16]
68	Lisa Nikolai	[24]
69	Brian O'Neill	[15]
70	Brandon Pearcy	[16] [19] [22]
71	Jun Peng	[37]
72	Luca Pireddu	[18] [19]
73	Brett Poulin	[8] [12] [16] [18] [19] [22]
74	Nick Psychogios	[36] [37]
75	Lori Querengesser	[24]
76	Anuj Ranjan	[5]
77	Frederic M. Richards	[2]
78	T. Rosborough	[3]
79	Melania Rouani	[9]
80	Summit Sawhney	[24]
81	Jonathan Schaeffer	[3]
82	Rustem Shaykhutdinov	[37]
83	Yi Shi	[32] [33]
84	Savita Shrivastava	[13] [15] [21] [24] [26] [30] [31] [32] [37]
85	Igor Sinelnikov	[37]
86	Constance A. Sobsey	[37]
87	Andrea De Souza	[37]
88	Paul Stothard	[6] [9] [13] [15] [17] [21] [24] [26] [29]
89	Shan Sundararaj	[9]
90	Brian D. Sykes	[1] [2] [5] [24]
91	Duane Szafron	[3] [8] [12] [13] [16] [18] [19] [22]
92	Peter Tang	[10] [24] [28] [34] [35]
93	Dan Tzur	[24] [31] [37]
94	Hans J. Vogel	[24] [37]
95	James Wagner	[24]
96	Alim M. Weljie	[24]
97	Leigh Willard	[2] [5]
98	David R. Woloschuk	[3]
99	W. Wong	[3]
100	Jennifer Woolsey	[21]
101	Jianguo Xia	[34] [36] [37]
102	Yeping Xiong	[37]
103	Robert Yang	[10]
104	Nelson Young	[11] [24] [29] [36] [37]
105	Haiyan Zhang	[4] [5] [7]
106	Ying Zhang	[24]
107	Jianjun Zhou	[28] [32] [33] [35]
108	You Zhou	[32] [35]
109	Azaret Zuniga	[37]